4YMU Crystal structure of an amino acid ABC transporter complex with arginines and ATPs date
authors Ge, J., Yu, J., Yang, M.
compound source
symmetry
R_factor
R_Free 0.2602
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand ARG, ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J


D, C


Primary referenceStructural basis for substrate specificity of an amino acid ABC transporter., Yu J, Ge J, Heuveling J, Schneider E, Yang M, Proc Natl Acad Sci U S A. 2015 Apr 6. pii: 201415037. PMID:25848002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (4ymu.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 4YMU
  • CSU: Contacts of Structural Units for 4YMU
  • Structure Factors (1004 Kb)
  • Retrieve 4YMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YMU from S2C, [Save to disk]
  • Re-refined 4ymu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YMU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YMU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ymu] [4ymu_A] [4ymu_C] [4ymu_J] [4ymu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YMU: [AAA ] by SMART
    • Other resources with information on 4YMU
  • Community annotation for 4YMU at PDBWiki (http://pdbwiki.org)

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