4YYJ Crystal structure of BRD9 Bromodomain bound to a butyryllysine peptide date
authors Tang, Y., Bellon, S., Cochran, A.G., Poy, F.
compound source
symmetry
R_factor
R_Free 0.2436
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand BTK enzyme
Primary referenceA Subset of Human Bromodomains Recognizes Butyryllysine and Crotonyllysine Histone Peptide Modifications., Flynn EM, Huang OW, Poy F, Oppikofer M, Bellon SF, Tang Y, Cochran AG, Structure. 2015 Sep 4. pii: S0969-2126(15)00329-9. doi:, 10.1016/j.str.2015.08.004. PMID:26365797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (4yyj.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (4yyj.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4YYJ
  • CSU: Contacts of Structural Units for 4YYJ
  • Structure Factors (604 Kb)
  • Retrieve 4YYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YYJ from S2C, [Save to disk]
  • Re-refined 4yyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YYJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yyj_B] [4yyj] [4yyj_D] [4yyj_A] [4yyj_C] [4yyj_E] [4yyj_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YYJ: [BROMO ] by SMART
    • Other resources with information on 4YYJ
  • Community annotation for 4YYJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science