4Z1V Structure of Factor Inhibiting HIF (FIH) in complex with Fe, NO, and NOG date
authors Taabazuing, C.Y., Garman, S.C., Knapp, M.J.
compound source
symmetry
R_factor
R_Free 0.2397
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand FE, NO, OGA, PEG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate Promotes Productive Gas Binding in the alpha-Ketoglutarate-Dependent Oxygenase FIH., Taabazuing CY, Fermann J, Garman S, Knapp MJ, Biochemistry. 2016 Jan 19;55(2):277-86. doi: 10.1021/acs.biochem.5b01003. Epub, 2016 Jan 5. PMID:26727884
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (4z1v.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 4Z1V
  • CSU: Contacts of Structural Units for 4Z1V
  • Structure Factors (607 Kb)
  • Retrieve 4Z1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z1V from S2C, [Save to disk]
  • Re-refined 4z1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z1V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z1v] [4z1v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z1V: [JmjC ] by SMART
    • Other resources with information on 4Z1V
  • Community annotation for 4Z1V at PDBWiki (http://pdbwiki.org)

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