4Z41 X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Compound with a S,O Bidentate Ligand (9a=Chloro-(1-(3'-hydroxy)-3-(methylthio)-3-thioxo-prop-1-en-1-olate-O,S)-(dimethylsulfoxide-S)-platinum(II)) date
authors Merlino, A.
compound source
symmetry
R_factor
R_Free 0.21921
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand 4KV, DMS, EDO, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePlatinum(II) Complexes with O,S Bidentate Ligands: Biophysical Characterization, Antiproliferative Activity, and Crystallographic Evidence of Protein Binding., Mugge C, Marzo T, Massai L, Hildebrandt J, Ferraro G, Rivera-Fuentes P, Metzler-Nolte N, Merlino A, Messori L, Weigand W, Inorg Chem. 2015 Aug 17. PMID:26280387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (4z41.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4Z41
  • CSU: Contacts of Structural Units for 4Z41
  • Structure Factors (270 Kb)
  • Retrieve 4Z41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z41 from S2C, [Save to disk]
  • Re-refined 4z41 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z41
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z41_A] [4z41]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z41: [LYZ1 ] by SMART
    • Other resources with information on 4Z41
  • Community annotation for 4Z41 at PDBWiki (http://pdbwiki.org)

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