OCA Atlas for 4ZFG

4ZFG

Dual-specificity Fab 5A12 in complex with Angiopoietin 2

date

authors

Harris, S.F., Wu, P.

compound

source

symmetry

R_factor

R_Free

0.2228

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

2.27

ligand

CA, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Deep sequencing-guided design of a high affinity dual-specific antibody to target two angiogenic factors in neovascular age-related macular degeneration., Koenig P, Lee CV, Sanowar S, Wu P, Stinson J, Harris SF, Fuh G, J Biol Chem. 2015 Jun 18. pii: jbc.M115.662783. PMID:26088137

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]

Biological Unit Coordinates (4zfg.pdb1.gz) 112 Kb

LPC: Ligand-Protein Contacts for 4ZFG

CSU: Contacts of Structural Units for 4ZFG

Structure Factors (423 Kb)

Retrieve 4ZFG in mmCIF format [Save to disk]

Re-refined 4zfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ZFG in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4ZFG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4zfg] [4zfg_A] [4zfg_H] [4zfg_L]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 4ZFG: [FBG] [IG_like] [IGv ] by SMART

Other resources with information on 4ZFG

Community annotation for 4ZFG at PDBWiki (http://pdbwiki.org)

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