4ZGH Structure of Sugar Binding Protein Pneumolysin date
authors Parker, M.W., Feil, S.C., Morton, C.
compound source
symmetry
R_factor
R_Free 0.3069
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand AUC, EDO, PEG enzyme
Gene SPD
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceCrystal structure of Streptococcus pneumoniae pneumolysin provides key insights into early steps of pore formation., Lawrence SL, Feil SC, Morton CJ, Farrand AJ, Mulhern TD, Gorman MA, Wade KR, Tweten RK, Parker MW, Sci Rep. 2015 Sep 25;5:14352. doi: 10.1038/srep14352. PMID:26403197
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (4zgh.pdb1.gz) 232 Kb
  • LPC: Ligand-Protein Contacts for 4ZGH
  • CSU: Contacts of Structural Units for 4ZGH
  • Structure Factors (882 Kb)
  • Retrieve 4ZGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZGH from S2C, [Save to disk]
  • Re-refined 4zgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZGH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zgh_A] [4zgh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZGH
  • Community annotation for 4ZGH at PDBWiki (http://pdbwiki.org)

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