5A3W Crystal structure of human PLU-1 (JARID1B) in complex with Pyridine-2, 6-dicarboxylic Acid (PDCA) date
authors Srikannathasan, V., Johansson, C., Gileadi, C., Kopec, J., Strain-Damerell, C., Kupinska, K., Burgess-Brown, N.A., Delft, F.von., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Oppermann, U.
compound source
symmetry
R_factor
R_Free 0.2161
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand EDO, EPE, MN, NA, PD2, PO4, ZN enzyme
Primary referenceStructural analysis of human KDM5B guides histone demethylase inhibitor development., Johansson C, Velupillai S, Tumber A, Szykowska A, Hookway ES, Nowak RP, Strain-Damerell C, Gileadi C, Philpott M, Burgess-Brown N, Wu N, Kopec J, Nuzzi A, Steuber H, Egner U, Badock V, Munro S, LaThangue NB, Westaway S, Brown J, Athanasou N, Prinjha R, Brennan PE, Oppermann U, Nat Chem Biol. 2016 May 23. doi: 10.1038/nchembio.2087. PMID:27214403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (5a3w.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 5A3W
  • CSU: Contacts of Structural Units for 5A3W
  • Structure Factors (3359 Kb)
  • Retrieve 5A3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A3W from S2C, [Save to disk]
  • Re-refined 5a3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A3W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5A3W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a3w] [5a3w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A3W: [JmjC] [JmjN ] by SMART
    • Other resources with information on 5A3W
  • Community annotation for 5A3W at PDBWiki (http://pdbwiki.org)

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