5A4K Crystal structure of the R139W variant of human NAD(P)H:quinone oxidoreductase date
authors Lienhart, W.D., Strandback, E., Gudipati, V., Uhl, M.K., Rantase, D.M., Zangger, K., Gruber, K., Macheroux, P.
compound source
symmetry
R_factor
R_Free 0.2013
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.09
ligand BTB, FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • superoxide dismutase activit...
  • synaptic transmission, choli...

    • Primary referenceCatalytic competence, structure and stability of the cancer associated R139W variant of the human NAD(P)H:quinone oxidoreductase 1 (NQO1)., Lienhart WD, Strandback E, Gudipati V, Koch K, Binter A, Uhl MK, Rantasa DM, Bourgeois B, Madl T, Zangger K, Gruber K, Macheroux P, FEBS J. 2017 Feb 25. doi: 10.1111/febs.14051. PMID:28236663
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (5a4k.pdb1.gz) 187 Kb
  • Biological Unit Coordinates (5a4k.pdb2.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 5A4K
  • CSU: Contacts of Structural Units for 5A4K
  • Structure Factors (3605 Kb)
  • Retrieve 5A4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A4K from S2C, [Save to disk]
  • Re-refined 5a4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A4K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a4k_D] [5a4k_B] [5a4k_A] [5a4k_C] [5a4k]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5A4K
  • Community annotation for 5A4K at PDBWiki (http://pdbwiki.org)

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