5A5P Crystal structure of human ATAD2 bromodomain in complex with 8-2-(dimethylamino)ethylamino-3-methyl-1,2-dihydroquinolin-2-one date
authors Chung, C., Bamborough, P., Demont, E.
compound source
symmetry
R_factor
R_Free 0.20805
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.03
ligand EDO, JTF, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment-Based Discovery of Low-Micromolar ATAD2 Bromodomain Inhibitors., Demont EH, Chung CW, Furze RC, Grandi P, Michon AM, Wellaway C, Barrett N, Bridges AM, Craggs PD, Diallo H, Dixon DP, Douault C, Emmons AJ, Jones EJ, Karamshi BV, Locke K, Mitchell DJ, Mouzon BH, Prinjha RK, Roberts AD, Sheppard RJ, Watson RJ, Bamborough P, J Med Chem. 2015 Jul 9. PMID:26155854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5a5p.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5A5P
  • CSU: Contacts of Structural Units for 5A5P
  • Structure Factors (298 Kb)
  • Retrieve 5A5P in mmCIF format [Save to disk]
  • Re-refined 5a5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a5p_A] [5a5p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A5P: [BROMO ] by SMART
    • Other resources with information on 5A5P
  • Community annotation for 5A5P at PDBWiki (http://pdbwiki.org)

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