5A9U Structure of C1156Y Mutant Human Anaplastic Lymphoma Kinase in Complex with PF-06463922 ((10R)-7-amino-12-fluoro-2,10,16-trimethyl- 15-oxo-10,15,16,17-tetrahydro-2H-8,4-(metheno)pyrazolo(4,3-h)(2,5,11) benzoxadiazacyclotetradecine-3-carbonitrile). date
authors McTigue, M., Deng, Y.L., Liu, W., Brooun, A., Stewart, A.
compound source
symmetry
R_factor
R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand 5P8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceResensitization to Crizotinib by the Lorlatinib ALK Resistance Mutation L1198F., Shaw AT, Friboulet L, Leshchiner I, Gainor JF, Bergqvist S, Brooun A, Burke BJ, Deng YL, Liu W, Dardaei L, Frias RL, Schultz KR, Logan J, James LP, Smeal T, Timofeevski S, Katayama R, Iafrate AJ, Le L, McTigue M, Getz G, Johnson TW, Engelman JA, N Engl J Med. 2016 Jan 7;374(1):54-61. doi: 10.1056/NEJMoa1508887. Epub 2015 Dec , 23. PMID:26698910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5a9u.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5A9U
  • CSU: Contacts of Structural Units for 5A9U
  • Structure Factors (320 Kb)
  • Retrieve 5A9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A9U from S2C, [Save to disk]
  • Re-refined 5a9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A9U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a9u_A] [5a9u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A9U: [TyrKc ] by SMART
  • Other resources with information on 5A9U
  • Community annotation for 5A9U at PDBWiki (http://pdbwiki.org)

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