OCA Atlas for 5AA4

5AA4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6X4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B

Primary reference

Activation by Allostery in Cell-Wall Remodeling by a Modular Membrane-Bound Lytic Transglycosylase from Pseudomonas aeruginosa., Dominguez-Gil T, Lee M, Acebron-Avalos I, Mahasenan KV, Hesek D, Dik DA, Byun B, Lastochkin E, Fisher JF, Mobashery S, Hermoso JA, Structure. 2016 Oct 4;24(10):1729-1741. doi: 10.1016/j.str.2016.07.019. Epub 2016, Sep 8. PMID:27618662

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (518 Kb) [Save to disk]

Biological Unit Coordinates (5aa4.pdb1.gz) 133 Kb

Biological Unit Coordinates (5aa4.pdb2.gz) 132 Kb

Biological Unit Coordinates (5aa4.pdb3.gz) 129 Kb

Biological Unit Coordinates (5aa4.pdb4.gz) 130 Kb

LPC: Ligand-Protein Contacts for 5AA4

CSU: Contacts of Structural Units for 5AA4

Structure Factors (1658 Kb)

Retrieve 5AA4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5AA4 from S2C, [Save to disk]

Re-refined 5aa4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AA4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5aa4] [5aa4_A] [5aa4_B] [5aa4_C] [5aa4_D]

SWISS-PROT database:

Domain found in 5AA4: [PBPb ] by SMART

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