5ACY N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 1-(2R,4S)-2-methyl-4-(phenylamino)-6-4-(piperidin-1-ylmethyl)phenyl-1,2,3,4- tetrahydroquinolin-1-yl-ethan-1-one date
authors Chung, C.
compound source
symmetry
R_factor
R_Free 0.27081
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.01
ligand 9S3, EDO enzyme
Primary referenceAutism-like syndrome is induced by pharmacological suppression of BET proteins in young mice., Sullivan JM, Badimon A, Schaefer U, Ayata P, Gray J, Chung CW, von Schimmelmann M, Zhang F, Garton N, Smithers N, Lewis H, Tarakhovsky A, Prinjha RK, Schaefer A, J Exp Med. 2015 Sep 21. pii: jem.20151271. PMID:26392221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5acy.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (5acy.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5ACY
  • CSU: Contacts of Structural Units for 5ACY
  • Structure Factors (343 Kb)
  • Retrieve 5ACY in mmCIF format [Save to disk]
  • Re-refined 5acy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ACY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ACY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5acy_A] [5acy_B] [5acy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5ACY: [BROMO ] by SMART
    • Other resources with information on 5ACY
  • Community annotation for 5ACY at PDBWiki (http://pdbwiki.org)

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