5AJA Crystal structure of mandrill SAMHD1 (amino acid residues 1-114) bound to Vpx isolated from mandrill and human DCAF1 (amino acid residues 1058-1396) date
authors Schwefel, D., Boucherit, V.C., Christodoulou, E., Walker, P.A., Stoye, J.P., Bishop, K.N., Taylor, I.A.
compound source
symmetry
R_factor
R_Free 0.2270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMolecular Determinants for Recognition of Divergent SAMHD1 Proteins by the Lentiviral Accessory Protein Vpx., Schwefel D, Boucherit VC, Christodoulou E, Walker PA, Stoye JP, Bishop KN, Taylor IA, Cell Host Microbe. 2015 Apr 8;17(4):489-99. doi: 10.1016/j.chom.2015.03.004. PMID:25856754
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5aja.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 5AJA
  • CSU: Contacts of Structural Units for 5AJA
  • Structure Factors (216 Kb)
  • Retrieve 5AJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AJA from S2C, [Save to disk]
  • Re-refined 5aja structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AJA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5AJA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aja_A] [5aja] [5aja_C] [5aja_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AJA: [SAM ] by SMART
    • Other resources with information on 5AJA
  • Community annotation for 5AJA at PDBWiki (http://pdbwiki.org)

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