5AL3 Transferase date Mar 06, 2015
title Crystal Structure Of Tnks2 In Complex With 2-(2,4-Dichloroph Methyl-1h,2h,3h,4h-Pyrido(2,3-D)Pyrimidin-4-One
authors Y.Nkizinkiko, L.Lehtio
compound source
Molecule: Tankyrase 2
Chain: A, B
Fragment: Catalytic Domain, Residues 946-1162
Synonym: Tank2, Adp-Ribosyltransferase Diphtheria Toxin-Lik Adp-Ribose Polymerase 5b, Tnks-2, Trf1-Interacting Ankyrin Adp-Ribose Polymerase 2, Tankyrase II, Tankyrase-Like Prote Tankyrase-Related Protein, Artd6;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.159 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.620 98.570 118.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand GOL, SO4, TGW, ZN enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of potent and selective nonplanar tankyrase inhibiting nicotinamide mimics., Nkizinkiko Y, Suneel Kumar BV, Jeankumar VU, Haikarainen T, Koivunen J, Madhuri C, Yogeeswari P, Venkannagari H, Obaji E, Pihlajaniemi T, Sriram D, Lehtio L, Bioorg Med Chem. 2015 Aug 1;23(15):4139-49. doi: 10.1016/j.bmc.2015.06.063. Epub , 2015 Jul 2. PMID:26183543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5al3.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (5al3.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 5AL3
  • CSU: Contacts of Structural Units for 5AL3
  • Structure Factors (481 Kb)
  • Retrieve 5AL3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AL3 from S2C, [Save to disk]
  • Re-refined 5al3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AL3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AL3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5al3_B] [5al3] [5al3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AL3
  • Community annotation for 5AL3 at PDBWiki (http://pdbwiki.org)

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