5AMB Hydrolase date Mar 10, 2015
title Crystal Structure Of The Angiotensin-1 Converting Enzyme N-D Complex With Amyloid-Beta 35-42
authors G.Masuyer, K.M.Larmuth, R.G.Douglas, E.D.Sturrock, K.R.Acharya
compound source
Molecule: Angiotensin-Converting Enzyme
Chain: A, B
Fragment: N Domain, Unp Residues 30-657
Synonym: Ace, Dipeptidyl Carboxypeptidase I, Kininase II
Ec: 3.4.15.1
Engineered: Yes
Mutation: Yes
Other_details: Minimally Glycosylated Mutant
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho K1

Molecule: Amyloid Beta A4 Protein
Chain: P, Q
Fragment: Unp Residues 706-713
Engineered: Yes
Other_details: Only Di-Peptide Ile-Ala (41-42) Visible In S

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.158 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.979 76.950 83.219 88.63 64.14 75.22
method X-Ray Diffractionresolution 1.55 Å
ligand BMA, CL, FUC, NAG, P6G, PEG, PG4, ZN enzyme Hydrolase E.C.3.4.15.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceKinetic and structural characterisation of amyloid-beta peptides hydrolysis by human angiotensin-1-converting enzyme., Larmuth KM, Masuyer G, Douglas RG, Schwager SL, Acharya KR, Sturrock ED, FEBS J. 2016 Jan 8. doi: 10.1111/febs.13647. PMID:26748546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk]
  • Biological Unit Coordinates (5amb.pdb1.gz) 229 Kb
  • Biological Unit Coordinates (5amb.pdb2.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 5AMB
  • CSU: Contacts of Structural Units for 5AMB
  • Structure Factors (8893 Kb)
  • Retrieve 5AMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AMB from S2C, [Save to disk]
  • Re-refined 5amb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AMB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5amb_A] [5amb_P] [5amb] [5amb_Q] [5amb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AMB
  • Community annotation for 5AMB at PDBWiki (http://pdbwiki.org)

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