5AN8 Transport Protein date Sep 04, 2015
title Cryo-Electron Microscopy Structure Of Rabbit Trpv2 Ion Chann
authors L.Zubcevic, M.A.J.Herzik, B.C.Chung, G.C.Lander, S.Y.Lee
compound source
Molecule: Trpv2
Chain: A, B, C, D
Engineered: Yes
Other_details: Rabbit Trpv2
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCryo-electron microscopy structure of the TRPV2 ion channel., Zubcevic L, Herzik MA Jr, Chung BC, Liu Z, Lander GC, Lee SY, Nat Struct Mol Biol. 2016 Jan 18. doi: 10.1038/nsmb.3159. PMID:26779611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (5an8.pdb1.gz) 324 Kb
  • CSU: Contacts of Structural Units for 5AN8
  • Retrieve 5AN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AN8 from S2C, [Save to disk]
  • View 5AN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AN8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5an8_D] [5an8_B] [5an8_C] [5an8_A] [5an8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AN8: [ANK ] by SMART
  • Other resources with information on 5AN8
  • Community annotation for 5AN8 at PDBWiki (http://pdbwiki.org)

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