5ANU Hydrolase date Sep 08, 2015
title Mth1 In Complex With Compound 15
authors J.A.Read, J.Breed
compound source
Molecule: 7,8-Dihydro-8-Oxoguanine Triphosphatase
Chain: A
Fragment: Unp Residues 42-197
Synonym: 2-Hydroxy-Datp Diphosphatase, 8-Oxo-Dgtpase, Nucle Diphosphate-Linked Moiety X Motif 1, Nudix Motif 1, Mth1;
Ec: 3.6.1.55, 3.6.1.56
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Gold
symmetry Space Group: P 21 21 2
R_factor 0.20668 R_Free 0.25745
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.210 66.830 36.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 58T, DMS enzyme Hydrolase E.C.3.6.1.55 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotent and Selective Inhibitors of MTH1 Probe Its Role in Cancer Cell Survival., Kettle JG, Alwan H, Bista M, Breed J, Davies NL, Eckersley K, Fillery S, Foote KM, Goodwin L, Jones DR, Kack H, Lau A, Nissink JW, Read J, Scott JS, Taylor B, Walker G, Wissler L, Wylot M, J Med Chem. 2016 Feb 16. PMID:26878898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5anu.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 5ANU
  • CSU: Contacts of Structural Units for 5ANU
  • Structure Factors (246 Kb)
  • Retrieve 5ANU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ANU from S2C, [Save to disk]
  • Re-refined 5anu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ANU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ANU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5anu] [5anu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ANU
  • Community annotation for 5ANU at PDBWiki (http://pdbwiki.org)

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