5AO3 Hydrolase date Sep 09, 2015
title Crystal Structure Of Human Samhd1 (Amino Acid Residues 115-6 To Gtp
authors D.Schwefel, I.A.Taylor
compound source
Molecule: Deoxynucleoside Triphosphate Triphosphohydrolase
Chain: A, B, C, D
Fragment: Unp Residues 115-626
Synonym: Dntpase, Dendritic Cell-Derived Ifng-Induced Prote Monocyte Protein 5, Mop-5, Sam Domain And Hd Domain-Contain Protein 1, Samhd1;
Ec: 3.1.5.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet52b
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.919 95.733 97.592 91.37 108.97 115.33
method X-Ray Diffractionresolution 3.00 Å
ligand FE, GTP, SO4 enzyme Hydrolase E.C.3.1.5 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (579 Kb) [Save to disk]
  • Biological Unit Coordinates (5ao3.pdb1.gz) 566 Kb
  • LPC: Ligand-Protein Contacts for 5AO3
  • CSU: Contacts of Structural Units for 5AO3
  • Structure Factors (406 Kb)
  • Retrieve 5AO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AO3 from S2C, [Save to disk]
  • Re-refined 5ao3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AO3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ao3] [5ao3_B] [5ao3_A] [5ao3_C] [5ao3_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AO3: [HDc ] by SMART
    • Other resources with information on 5AO3
  • Community annotation for 5AO3 at PDBWiki (http://pdbwiki.org)

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