5AQX Chaperone date Sep 22, 2015
title Fragment-Based Screening Of Hsp70 Sheds Light On The Functio Of Atp-Binding Site Residues
authors A.M.Jones, I.M.Westwood, J.D.Osborne, T.P.Matthews, M.D.Cheesema M.G.Rowlands, F.Jeganathan, R.Burke, D.Lee, N.Kadi, M.Liu, M.Rich C.Mcandrew, N.Yahya, S.E.Dobson, K.Jones, P.Workman, I.Collins, R Montfort
compound source
Molecule: Heat Shock 70 Kda Protein 1a
Chain: A
Fragment: Nucleotide Binding Domain, Unp Residues 1-380
Synonym: Heat Shock 70 Kda Protein 1, Hsp70-1, Hsp70.1
Ec: 3.6.3.51
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ai
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-1
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.845 82.021 94.421 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand CL, DMS, KC7 enzyme Hydrolase E.C.3.6.3.51 BRENDA
Primary referenceA fragment-based approach applied to a highly flexible target: Insights and challenges towards the inhibition of HSP70 isoforms., Jones AM, Westwood IM, Osborne JD, Matthews TP, Cheeseman MD, Rowlands MG, Jeganathan F, Burke R, Lee D, Kadi N, Liu M, Richards M, McAndrew C, Yahya N, Dobson SE, Jones K, Workman P, Collins I, van Montfort RL, Sci Rep. 2016 Oct 6;6:34701. doi: 10.1038/srep34701. PMID:27708405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (5aqx.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5AQX
  • CSU: Contacts of Structural Units for 5AQX
  • Structure Factors (327 Kb)
  • Retrieve 5AQX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AQX from S2C, [Save to disk]
  • Re-refined 5aqx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AQX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AQX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aqx] [5aqx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AQX
  • Community annotation for 5AQX at PDBWiki (http://pdbwiki.org)

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