5AVD	Isomerase	date	Jun 15, 2015
title	The 0.86 Angstrom Structure Of Elastase Crystallized In High Agarose Hydrogel
authors	S.Sugiyama, N.Shimizu, M.Maruyama, G.Sazaki, H.Adachi, K.Takano, S.Murakami, T.Inoue, Y.Mori, H.Matsumura
compound		source
Molecule: Chymotrypsin-Like Elastase Family Member 1 Chain: A Synonym: Elastase-1 Ec: 3.4.21.36 Engineered: Yes		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Gene: Cela1, Ela1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 21	R_factor 0.128 R_Free 0.140
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.992 58.210 74.425 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	0.86 Å
ligand	SO4	enzyme	Hydrolase E.C.3.4.21.36 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Growth of protein crystals in hydrogels prevents osmotic shock., Sugiyama S, Maruyama M, Sazaki G, Hirose M, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Matsumura H, J Am Chem Soc. 2012 Apr 4;134(13):5786-9. doi: 10.1021/ja301584y. Epub 2012 Mar, 27. PMID:22435400

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (5avd.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 5AVD CSU: Contacts of Structural Units for 5AVD Structure Factors (1674 Kb) Retrieve 5AVD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AVD from S2C, [Save to disk] Re-refined 5avd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AVD in 3D

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Visual 3D analysis of 5AVD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5avd] [5avd_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5AVD: [Tryp_SPc ] by SMART

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