5AVL	Transcription	date	Jun 17, 2015
title	Crystal Structure Of Lxralpha In Complex With Tert-Butyl Ben Analog, Compound 32b
authors	Y.Matsui, H.Hanzawa, K.Tamaki
compound		source
Molecule: Oxysterols Receptor Lxr-Alpha Chain: A Fragment: Ligand Binding Domain, Unp Residues 182-447 Synonym: Liver X Receptor Alpha,Nuclear Receptor Subfamily Member 3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h3, Lxra Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Nuclear Receptor Coactivator 1 Chain: B Fragment: Unp Residues 676-700 Synonym: Ncoa-1,Class E Basic Helix-Loop-Helix Protein 74,B Protein Hin-2,Rip160,Renal Carcinoma Antigen Ny-Ren-52,Ster Receptor Coactivator 1,Src-1; Ec: 2.3.1.48 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 4 2 2	R_factor 0.192 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.909 124.909 91.920 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	4KQ	enzyme	Transferase E.C.2.3.1.48 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Discovery and structure-guided optimization of tert-butyl 6-(phenoxymethyl)-3-(trifluoromethyl)benzoates as liver X receptor agonists., Matsui Y, Yamaguchi T, Yamazaki T, Yoshida M, Arai M, Terasaka N, Honzumi S, Wakabayashi K, Hayashi S, Nakai D, Hanzawa H, Tamaki K, Bioorg Med Chem Lett. 2015 Sep 15;25(18):3914-20. doi:, 10.1016/j.bmcl.2015.07.047. Epub 2015 Jul 23. PMID:26238323

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (5avl.pdb1.gz) 165 Kb LPC: Ligand-Protein Contacts for 5AVL CSU: Contacts of Structural Units for 5AVL Structure Factors (370 Kb) Retrieve 5AVL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AVL from S2C, [Save to disk] Re-refined 5avl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5AVL

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5avl_B] [5avl] [5avl_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5AVL: [HOLI ] by SMART

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