5BRU Oxidoreductase date Jun 01, 2015
title Catalytic Improvement Of An Artificial Metalloenzyme By Comp Design
authors T.Heinisch, M.Pellizzoni, M.Duerrenberger, C.E.Tinberg, V.Koehle J.Klehr, D.Haeussinger, D.Baker, T.R.Ward
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paca
symmetry Space Group: P 1 21 1
R_factor 0.137 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.308 41.689 72.343 90.00 104.26 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 8TH, SO4, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImproving the Catalytic Performance of an Artificial Metalloenzyme by Computational Design., Heinisch T, Pellizzoni M, Durrenberger M, Tinberg CE, Kohler V, Klehr J, Haussinger D, Baker D, Ward TR, J Am Chem Soc. 2015 Aug 7. PMID:26226626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5bru.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 5BRU
  • CSU: Contacts of Structural Units for 5BRU
  • Structure Factors (1640 Kb)
  • Retrieve 5BRU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BRU from S2C, [Save to disk]
  • Re-refined 5bru structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BRU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BRU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bru] [5bru_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BRU: [Carb_anhydrase ] by SMART
  • Other resources with information on 5BRU
  • Community annotation for 5BRU at PDBWiki (http://pdbwiki.org)

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