5BT1 Chaperone date Jun 02, 2015
title Histone Chaperone Hif1 Playing With Histone H2a-H2b Dimer
authors H.Liu, M.Zhang, Y.Gao, M.Teng, L.Niu
compound source
Molecule: Hat1-Interacting Factor 1
Chain: A, B
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Hif1, Yll022c, L1205
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a.1
Chain: C
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Hta1, H2a1, Spt11, Ydr225w, Yd9934.10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b.1
Chain: D
Synonym: Suppressor Of Ty Protein 12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Htb1, H2b1, Spt12, Ydr224c, Yd9934.09c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.673 48.363 160.706 90.00 107.05 90.00
method X-Ray Diffractionresolution 2.62 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • chromatin silencing at telom...

    • C


    D


    Primary referenceStructural Insights into the Association of Hif1 with Histones H2A-H2B Dimer and H3-H4 Tetramer., Zhang M, Liu H, Gao Y, Zhu Z, Chen Z, Zheng P, Xue L, Li J, Teng M, Niu L, Structure. 2016 Oct 4;24(10):1810-1820. doi: 10.1016/j.str.2016.08.001. Epub 2016, Sep 8. PMID:27618665
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (5bt1.pdb1.gz) 214 Kb
  • CSU: Contacts of Structural Units for 5BT1
  • Structure Factors (337 Kb)
  • Retrieve 5BT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BT1 from S2C, [Save to disk]
  • Re-refined 5bt1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BT1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bt1_C] [5bt1_D] [5bt1_A] [5bt1_B] [5bt1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5BT1: [H2A] [H2B ] by SMART
    • Other resources with information on 5BT1
  • Community annotation for 5BT1 at PDBWiki (http://pdbwiki.org)

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