5BV7 Hydrolase Immune System date Jun 04, 2015
title Crystal Structure Of Human Lcat (L4f, N5d) In Complex With F Agonistic Antibody
authors D.E.Piper, W.G.Romanow, S.T.Thibault, N.P.C.Walker
compound source
Molecule: Phosphatidylcholine-Sterol Acyltransferase
Chain: A
Synonym: Lecithin-Cholesterol Acyltransferase,Phospholipid- Cholesterol Acyltransferase;
Ec: 2.3.1.43
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Ovary

Molecule: 27c3 Light Chain
Chain: L
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 27c3 Heavy Chain
Chain: H
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fab1 Light Chain
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab1 Heavy Chain
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.944 127.595 256.079 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand MAN, NAG enzyme Transferase E.C.2.3.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAgonistic Human Antibodies Binding To Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism., Gunawardane RN, Fordstrom P, Piper DE, Masterman S, Siu S, Liu D, Brown M, Lu M, Tang J, Zhang R, Cheng J, Gates A, Meininger D, Chan J, Carlson T, Walker N, Schwarz M, Delaney J, Zhou M, J Biol Chem. 2015 Dec 7. pii: jbc.M115.672790. PMID:26644477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (5bv7.pdb1.gz) 201 Kb
  • Biological Unit Coordinates (5bv7.pdb2.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5BV7
  • CSU: Contacts of Structural Units for 5BV7
  • Structure Factors (3550 Kb)
  • Retrieve 5BV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BV7 from S2C, [Save to disk]
  • Re-refined 5bv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BV7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bv7] [5bv7_L] [5bv7_B] [5bv7_A] [5bv7_H] [5bv7_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5BV7: [IG_like] [IGv ] by SMART
    • Other resources with information on 5BV7
  • Community annotation for 5BV7 at PDBWiki (http://pdbwiki.org)

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