5BYM	Rna Binding Protein Rna	date	Jun 10, 2015
title	Crystal Structure Of The Rna-Binding Domain Of Yeast Puf5p B Smx2 Rna
authors	C.Qiu, T.M.T.Hall
compound		source
Molecule: Suppressor Protein Mpt5 Chain: A Fragment: Unp Residues 201-600 Synonym: Protein Htr1,Pumilio Homology Domain Family Member Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Mpt5, Htr1, Puf5, Ygl178w, Bic834 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'-R(Upgpupapcpupapupa)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 2	R_factor 0.241 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.215 100.792 49.440 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.71 Å
Gene Ontology	Chain Function Process Component A
Primary reference	RNA regulatory networks diversified through curvature of the PUF protein scaffold., Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M, Nat Commun. 2015 Sep 14;6:8213. doi: 10.1038/ncomms9213. PMID:26364903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (5bym.pdb1.gz) 129 Kb CSU: Contacts of Structural Units for 5BYM Structure Factors (107 Kb) Retrieve 5BYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BYM from S2C, [Save to disk] Re-refined 5bym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5BYM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bym_C] [5bym] [5bym_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5BYM: [Pumilio ] by SMART

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