5C27	Transferase Inhibitor	date	Jun 15, 2015
title	Crystal Structure Of Syk In Complex With Compound 2
authors	S.Han, J.Chang
compound		source
Molecule: Tyrosine-Protein Kinase Syk Chain: A Fragment: Unp Residues 343-635 Synonym: Spleen Tyrosine Kinase,P72-Syk Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Syk Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Glu-Val-Tyr-Glu-Ser Chain: D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: P 21 21 21	R_factor 0.177 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.879 84.875 89.592 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	50J, GOL, PTR	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Imidazotriazines: Spleen Tyrosine Kinase (Syk) Inhibitors Identified by Free-Energy Perturbation (FEP)., Lovering F, Aevazelis C, Chang J, Dehnhardt C, Fitz L, Han S, Janz K, Lee J, Kaila N, McDonald J, Moore W, Moretto A, Papaioannou N, Richard D, Ryan MS, Wan ZK, Thorarensen A, ChemMedChem. 2015 Sep 18. doi: 10.1002/cmdc.201500333. PMID:26381330

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (5c27.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 5C27 CSU: Contacts of Structural Units for 5C27 Structure Factors (418 Kb) Retrieve 5C27 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C27 from S2C, [Save to disk] Re-refined 5c27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C27 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C27

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c27] [5c27_D] [5c27_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5C27: [TyrKc ] by SMART

Other resources with information on 5C27

Community annotation for 5C27 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---