5C4L Transferase date Jun 18, 2015
title Conformational Alternate Of Sisomicin In Complex With Aph(2"
authors E.Kaplan, J.F.Guichou, K.Berrou, L.Chaloin, N.Leban, P.Lallemand, E.H.Serpersu, C.Lionne
compound source
Molecule: Aph(2'')-Id
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Enterococcus Casseliflavus
Organism_taxid: 37734
Gene: Aph(2'')-Id
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.220 65.040 78.780 90.00 91.18 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 4XR, SIS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAminoglycoside binding and catalysis specificity of aminoglycoside 2''-phosphotransferase IVa: A thermodynamic, structural and kinetic study., Kaplan E, Guichou JF, Chaloin L, Kunzelmann S, Leban N, Serpersu EH, Lionne C, Biochim Biophys Acta. 2016 Jan 21. pii: S0304-4165(16)30002-2. doi:, 10.1016/j.bbagen.2016.01.016. PMID:26802312
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (5c4l.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (5c4l.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 5C4L
  • CSU: Contacts of Structural Units for 5C4L
  • Structure Factors (1668 Kb)
  • Retrieve 5C4L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C4L from S2C, [Save to disk]
  • Re-refined 5c4l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C4L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C4L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c4l] [5c4l_B] [5c4l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5C4L
  • Community annotation for 5C4L at PDBWiki (http://pdbwiki.org)

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