5C6E Oxygen Transport date Jun 22, 2015
title Joint X-Rayneutron Structure Of Equine Cyanomet Hemoglobin
authors S.Dajnowicz, S.Sean, B.L.Hanson, S.Z.Fisher, P.Langan, A.Y.Kovale T.C.Mueser
compound source
Molecule: Hemoglobin Subunit Alpha
Chain: A
Synonym: Alpha-Globin,Hemoglobin Alpha Chain
 Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796

Molecule: Hemoglobin Subunit Beta
Chain: B
Synonym: Beta-Globin,Hemoglobin Beta Chain
Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
symmetry Space Group: C 1 2 1
R_factor 0.301 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.860 63.160 54.710 90.00 110.75 90.00
method X-Ray Diffraction; Neutron Diffractionresolution 1.70 Å
ligand CYN, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • peroxidase activity


    • Primary referenceVisualizing the Bohr effect in hemoglobin: neutron structure of equine cyanomethemoglobin in the R state and comparison with human deoxyhemoglobin in the T state., Dajnowicz S, Seaver S, Hanson BL, Fisher SZ, Langan P, Kovalevsky AY, Mueser TC, Acta Crystallogr D Struct Biol. 2016 Jul 1;72(Pt 7):892-903. doi:, 10.1107/S2059798316009049. Epub 2016 Jun 28. PMID:27377386
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5c6e.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5C6E
  • CSU: Contacts of Structural Units for 5C6E
  • Structure Factors (523 Kb)
  • Retrieve 5C6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C6E from S2C, [Save to disk]
  • Re-refined 5c6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c6e_A] [5c6e] [5c6e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5C6E
  • Community annotation for 5C6E at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science