5C8N Transferase Transferase Inhibitor date Jun 25, 2015
title Egfr Kinase Domain Mutant "Tmlr" With Compound 23
authors C.Eigenbrot, C.Yu
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 2 3
R_factor 0.202 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.932 145.932 145.932 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 4YX, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNoncovalent Mutant Selective Epidermal Growth Factor Receptor Inhibitors: A Lead Optimization Case Study., Heald R, Bowman KK, Bryan MC, Burdick D, Chan B, Chan E, Chen Y, Clausen S, Dominguez-Fernandez B, Eigenbrot C, Elliott R, Hanan EJ, Jackson P, Knight J, La H, Lainchbury M, Malek S, Mann S, Merchant M, Mortara K, Purkey H, Schaefer G, Schmidt S, Seward E, Sideris S, Shao L, Wang S, Yeap K, Yen I, Yu C, Heffron TP, J Med Chem. 2015 Nov 25;58(22):8877-95. doi: 10.1021/acs.jmedchem.5b01412. Epub, 2015 Nov 12. PMID:26455919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5c8n.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5C8N
  • CSU: Contacts of Structural Units for 5C8N
  • Structure Factors (375 Kb)
  • Retrieve 5C8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C8N from S2C, [Save to disk]
  • Re-refined 5c8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C8N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c8n] [5c8n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C8N: [TyrKc ] by SMART
    • Other resources with information on 5C8N
  • Community annotation for 5C8N at PDBWiki (http://pdbwiki.org)

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