5CBG	Transport Protein	date	Jun 30, 2015
title	Calcium Activated Non-Selective Cation Channel
authors	B.Dhakshnamoorthy, A.Rohaim, H.Rui, L.Blachowicz, B.Roux
compound		source
Molecule: Ion Transport 2 Domain Protein Chain: A, B, C, D, E, F Engineered: Yes		Organism_scientific: Tsukamurella Paurometabola (Strain Atc Dsm 20162 Jcm 10117 Nbrc 16120 Nctc 13040); Organism_taxid: 521096 Strain: Atcc 8368 Dsm 20162 Jcm 10117 Nbrc 16120 Nc Gene: Tpau_1687 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_atcc_number: 8368 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe60
symmetry	Space Group: I 4	R_factor 0.233 R_Free 0.299
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.573 115.573 127.487 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.14 Å
ligand	CA, DMU	enzyme
Gene	TPAU
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural and functional characterization of a calcium-activated cation channel from Tsukamurella paurometabola., Dhakshnamoorthy B, Rohaim A, Rui H, Blachowicz L, Roux B, Nat Commun. 2016 Sep 28;7:12753. doi: 10.1038/ncomms12753. PMID:27678077

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (5cbg.pdb1.gz) 65 Kb Biological Unit Coordinates (5cbg.pdb2.gz) 63 Kb Biological Unit Coordinates (5cbg.pdb3.gz) 64 Kb LPC: Ligand-Protein Contacts for 5CBG CSU: Contacts of Structural Units for 5CBG Structure Factors (273 Kb) Retrieve 5CBG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CBG from S2C, [Save to disk] Re-refined 5cbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CBG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CBG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cbg] [5cbg_F] [5cbg_B] [5cbg_E] [5cbg_D] [5cbg_A] [5cbg_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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