5CDW Signaling Protein date Jul 05, 2015
title Crystal Structure Analysis Of A Mutant Grb2 Sh2 Domain (W121 Pyvnv Peptide
authors D.Papaioannou, S.Geibel, M.Kunze, C.Kay, G.Waksman
compound source
Molecule: Growth Factor Receptor-Bound Protein 2
Chain: A, E, B, C, G, H, K, L, O, P, U, V, Y, Z, c, d
Synonym: Adapter Protein Grb2,Protein Ash,Sh2sh3 Adapter G
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grb2, Ash
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ser-Ptr-Val-Asn-Val-Gln
Chain: D, M, s, a, F, J, N, R, T, X, b, f, h, j, I, Q
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.236 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.650 72.140 172.140 90.00 93.31 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand PTR enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (491 Kb) [Save to disk]
  • Biological Unit Coordinates (5cdw.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (5cdw.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (5cdw.pdb3.gz) 64 Kb
  • Biological Unit Coordinates (5cdw.pdb4.gz) 62 Kb
  • Biological Unit Coordinates (5cdw.pdb5.gz) 63 Kb
  • Biological Unit Coordinates (5cdw.pdb6.gz) 64 Kb
  • Biological Unit Coordinates (5cdw.pdb7.gz) 63 Kb
  • Biological Unit Coordinates (5cdw.pdb8.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5CDW
  • CSU: Contacts of Structural Units for 5CDW
  • Structure Factors (513 Kb)
  • Retrieve 5CDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CDW from S2C, [Save to disk]
  • Re-refined 5cdw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CDW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cdw_K] [5cdw_s] [5cdw_Z] [5cdw_a] [5cdw_F] [5cdw_M] [5cdw_Y] [5cdw_U] [5cdw_E] [5cdw_j] [5cdw_Q] [5cdw_O] [5cdw_h] [5cdw_N] [5cdw_B] [5cdw_V] [5cdw_d] [5cdw_D] [5cdw_T] [5cdw_f] [5cdw_R] [5cdw] [5cdw_I] [5cdw_H] [5cdw_J] [5cdw_P] [5cdw_A] [5cdw_L] [5cdw_c] [5cdw_X] [5cdw_G] [5cdw_b] [5cdw_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CDW: [SH2 ] by SMART
    • Other resources with information on 5CDW
  • Community annotation for 5CDW at PDBWiki (http://pdbwiki.org)

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