5CFY Transport Protein date Jul 08, 2015
title Crystal Structure Of Gltph R397a In Complex With Na+ And L-A
authors O.Boudker, S.Oh
compound source
Molecule: 425aa Long Hypothetical Proton Glutamate Symport
Chain: A, B, C, D, E, F
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pyrococcus Horikoshii (Strain Atcc 700 12428 Jcm 9974 Nbrc 100139 Ot-3);
Organism_taxid: 70601
Strain: Atcc 700860 Dsm 12428 Jcm 9974 Nbrc 100139
Gene: Ph1295
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh10b
symmetry Space Group: P 31
R_factor 0.249 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.958 116.958 313.517 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand ASP, NA enzyme
note 5CFY supersedes 4OYG
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (776 Kb) [Save to disk]
  • Biological Unit Coordinates (5cfy.pdb1.gz) 768 Kb
  • LPC: Ligand-Protein Contacts for 5CFY
  • CSU: Contacts of Structural Units for 5CFY
  • Structure Factors (1267 Kb)
  • Retrieve 5CFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CFY from S2C, [Save to disk]
  • Re-refined 5cfy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CFY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cfy_A] [5cfy_E] [5cfy] [5cfy_D] [5cfy_F] [5cfy_B] [5cfy_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CFY
  • Community annotation for 5CFY at PDBWiki (http://pdbwiki.org)

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