5CLQ	Hydrolase	date	Jul 16, 2015
title	Ran Y39a In Complex With Gppnhp And Ranbd1
authors	I.R.Vetter, S.Brucker
compound		source
Molecule: Gtp-Binding Nuclear Protein Ran Chain: A, C Synonym: Androgen Receptor-Associated Protein 24,Gtpase Ran Protein Tc4,Ras-Related Nuclear Protein; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ran, Ara24, Oksw-Cl.81 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_plasmid: Pet3d
Molecule: E3 Sumo-Protein Ligase Ranbp2 Chain: B, D Fragment: Ran Binding Domain 1, Unp Residues 1155-1321 Synonym: 358 Kda Nucleoporin,Nuclear Pore Complex Protein N Nucleoporin Nup358,Ran-Binding Protein 2,Ranbp2,P270; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ranbp2, Nup358 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_plasmid: Pgex4t1
symmetry	Space Group: C 2 2 21	R_factor 0.224 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.530 170.920 135.650 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	GNP, MG, SO4	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, C intracellular transport of v... D, B
Primary reference	Catalysis of GTP hydrolysis by small GTPases at atomic detail by integration of X-ray crystallography, experimental and theoretical IR spectroscopy., Rudack T, Jenrich S, Brucker S, Vetter IR, Gerwert K, Kotting C, J Biol Chem. 2015 Aug 13. pii: jbc.M115.648071. PMID:26272610

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (5clq.pdb1.gz) 58 Kb Biological Unit Coordinates (5clq.pdb2.gz) 57 Kb LPC: Ligand-Protein Contacts for 5CLQ CSU: Contacts of Structural Units for 5CLQ Structure Factors (187 Kb) Retrieve 5CLQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CLQ from S2C, [Save to disk] Re-refined 5clq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CLQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CLQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5clq_D] [5clq_A] [5clq_B] [5clq] [5clq_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CLQ: [RAN] [RanBD] [small_GTPase ] by SMART

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