5CMD	Cytokine	date	Jul 16, 2015
title	Oligomer Crystal Structure Of Cc Chemokine 5 (Ccl5)
authors	W.G.Liang, W.J.Tang
compound		source
Molecule: C-C Motif Chemokine 5 Chain: A, B, C, D, E, F Fragment: Unp Residues 27-91 Synonym: Eocp,Eosinophil Chemotactic Cytokine,Sis-Delta,Sma Inducible Cytokine A5,T Cell-Specific Protein P228,Tcp228,T Specific Protein Rantes; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccl5, D17s136e, Scya5 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 62	R_factor 0.213 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.720 124.720 127.050 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.09 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B receptor signaling protein t... CCR1 chemokine receptor bind... chemoattractant activity chemokine receptor antagonis...
Primary reference	Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3., Liang WG, Triandafillou CG, Huang TY, Zulueta MM, Banerjee S, Dinner AR, Hung SC, Tang WJ, Proc Natl Acad Sci U S A. 2016 May 3;113(18):5000-5. doi:, 10.1073/pnas.1523981113. Epub 2016 Apr 18. PMID:27091995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk] Biological Unit Coordinates (5cmd.pdb1.gz) 134 Kb LPC: Ligand-Protein Contacts for 5CMD CSU: Contacts of Structural Units for 5CMD Structure Factors (161 Kb) Retrieve 5CMD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CMD from S2C, [Save to disk] Re-refined 5cmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CMD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CMD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cmd_F] [5cmd] [5cmd_C] [5cmd_A] [5cmd_E] [5cmd_B] [5cmd_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5CMD: [SCY ] by SMART

Other resources with information on 5CMD

Community annotation for 5CMD at PDBWiki (http://pdbwiki.org)

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