5CNC Oxygen Storage date Jul 17, 2015
title Ultrafast Dynamics In Myoglobin: 0.6 Ps Time Delay
authors T.R.M.Barends, L.Foucar, A.Ardevol, K.J.Nass, A.Aquila, S.Botha, R K.Falahati, E.Hartmann, M.Hilpert, M.Heinz, M.C.Hoffmann, J.Koef J.Koglin, G.Kovacsova, M.Liang, D.Milathianaki, H.T.Lemke, J.Rei C.M.Roome, R.L.Shoeman, G.J.Williams, I.Burghardt, G.Hummer, S.B I.Schlichting
compound source
Molecule: Myoglobin
Chain: A
 Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.600 28.800 35.600 90.00 106.50 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CMO, HEM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDirect observation of ultrafast collective motions in CO myoglobin upon ligand dissociation., Barends TR, Foucar L, Ardevol A, Nass K, Aquila A, Botha S, Doak RB, Falahati K, Hartmann E, Hilpert M, Heinz M, Hoffmann MC, Kofinger J, Koglin JE, Kovacsova G, Liang M, Milathianaki D, Lemke H, Reinstein J, Roome CM, Shoeman RL, Williams GJ, Burghardt I, Hummer G, Boutet S, Schlichting I, Science. 2015 Sep 10. pii: aac5492. PMID:26359336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5cnc.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 5CNC
  • CSU: Contacts of Structural Units for 5CNC
  • Structure Factors (175 Kb)
  • Retrieve 5CNC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CNC from S2C, [Save to disk]
  • Re-refined 5cnc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CNC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CNC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cnc] [5cnc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CNC
  • Community annotation for 5CNC at PDBWiki (http://pdbwiki.org)

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