5CQ7 Transferase date Jul 21, 2015
title Crystal Structure Of The Bromodomain Of Bromodomain Adjacent Finger Domain Protein 2b (Baz2b) In Complex With N,N- Dimethylquinoxaline-6-Carboxamide (Sgc - Diamond I04-1 Frag Screening)
authors A.Bradley, N.Pearce, T.Krojer, J.Ng, R.Talon, M.Vollmar, B.Jose, F. Delft, C.Bountra, C.H.Arrowsmith, A.Edwards, S.Knapp, Structural Consortium (Sgc)
compound source
Molecule: Bromodomain Adjacent To Zinc Finger Domain Protei
Chain: A
Fragment: Bromodomain
Synonym: Hwalp4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Baz2b, Kiaa1476
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pnic28
symmetry Space Group: C 2 2 21
R_factor 0.174 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.850 96.560 57.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand 53G, EDO enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (5cq7.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 5CQ7
  • CSU: Contacts of Structural Units for 5CQ7
  • Structure Factors (198 Kb)
  • Retrieve 5CQ7 in mmCIF format [Save to disk]
  • Re-refined 5cq7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CQ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CQ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cq7] [5cq7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CQ7: [BROMO ] by SMART
    • Other resources with information on 5CQ7
  • Community annotation for 5CQ7 at PDBWiki (http://pdbwiki.org)

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