5CR1 Transport Protein date Jul 22, 2015
title Crystal Structure Of Ttrresveratrolt4 Complex
authors G.Zanotti, P.Florio, C.Folli, M.Cianci, D.Del Rio, R.Berni
compound source
Molecule: Transthyretin
Chain: A, B
Fragment: Unp Residues 30-145
Synonym: Attr,Prealbumin,Tbpa
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttr, Palb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgem
symmetry Space Group: P 21 21 2
R_factor 0.166 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.536 85.633 63.826 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand STL, T44 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


  • Primary referenceTransthyretin Binding Heterogeneity and Anti-amyloidogenic Activity of Natural Polyphenols and their Metabolites., Florio P, Folli C, Cianci M, Del Rio D, Zanotti G, Berni R, J Biol Chem. 2015 Oct 14. pii: jbc.M115.690172. PMID:26468275
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5cr1.pdb1.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 5CR1
  • CSU: Contacts of Structural Units for 5CR1
  • Structure Factors (487 Kb)
  • Retrieve 5CR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CR1 from S2C, [Save to disk]
  • Re-refined 5cr1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CR1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cr1_A] [5cr1_B] [5cr1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CR1: [TR_THY ] by SMART
  • Other resources with information on 5CR1
  • Community annotation for 5CR1 at PDBWiki (http://pdbwiki.org)

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