5CR6 Toxin date Jul 22, 2015
title Structure Of Pneumolysin At 1.98 A Resolution
authors J.E.Marshall, B.H.A.Faraj, A.R.Gingras, R.Lonnen, M.A.Sheikh, M.E Mezgueldi, P.C.E.Moody, P.W.Andrew, R.Wallis
compound source
Molecule: Pneumolysin
Chain: D
Synonym: Thiol-Activated Cytolysin
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Ply, Spd_1726
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.249 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.006 127.710 172.285 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
Gene
Ontology
ChainFunctionProcessComponent
D
  • toxin activity


  • Primary referenceThe Crystal Structure of Pneumolysin at 2.0 A Resolution Reveals the Molecular Packing of the Pre-pore Complex., Marshall JE, Faraj BH, Gingras AR, Lonnen R, Sheikh MA, El-Mezgueldi M, Moody PC, Andrew PW, Wallis R, Sci Rep. 2015 Sep 3;5:13293. doi: 10.1038/srep13293. PMID:26333773
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (5cr6.pdb1.gz) 158 Kb
  • CSU: Contacts of Structural Units for 5CR6
  • Structure Factors (2222 Kb)
  • Retrieve 5CR6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CR6 from S2C, [Save to disk]
  • Re-refined 5cr6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CR6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CR6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cr6] [5cr6_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5CR6
  • Community annotation for 5CR6 at PDBWiki (http://pdbwiki.org)

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