5CSG Immune System date Jul 23, 2015
title The Crystal Structure Of Beta2-Microglobulin R97q Mutant
authors M.De Rosa, M.Bolognesi, S.Ricagno
compound source
Molecule: Beta-2-Microglobulin
Chain: A
Fragment: Unp Residues 21-119
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 1 2 1
R_factor 0.180 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.353 29.070 61.240 90.00 98.06 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cellular response to iron io...

  • Primary referenceConformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity., Le Marchand T, de Rosa M, Salvi N, Sala BM, Andreas LB, Barbet-Massin E, Sormanni P, Barbiroli A, Porcari R, Sousa Mota C, de Sanctis D, Bolognesi M, Emsley L, Bellotti V, Blackledge M, Camilloni C, Pintacuda G, Ricagno S, Nat Commun. 2018 Apr 25;9(1):1658. doi: 10.1038/s41467-018-04078-y. PMID:29695721
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5csg.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5CSG
  • CSU: Contacts of Structural Units for 5CSG
  • Structure Factors (155 Kb)
  • Retrieve 5CSG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CSG from S2C, [Save to disk]
  • Re-refined 5csg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 5CSG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5csg] [5csg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CSG: [IGc1 ] by SMART
  • Other resources with information on 5CSG
  • Community annotation for 5CSG at PDBWiki (http://pdbwiki.org)

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