5CSZ	Immune System	date	Jul 23, 2015
title	Crystal Structure Of Gantenerumab Fab Fragment In Complex Wi 1-11
authors	J.Benz, D.Burger, H.R.Loetscher, B.Bohrmann
compound		source
Molecule: Gantenerumab Fab Fragment Heavy Chain Chain: H, A Fragment: Fab Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho
Molecule: Gantenerumab Fab Fragment Light Chain Chain: L, B Fragment: Fab Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho
Molecule: Amyloid Beta A4 Protein Chain: D, E Fragment: Unp Residues 672-682 Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Ce Vascular Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.196 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.137 66.242 105.156 90.00 99.09 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	NAG, SO4	enzyme
Primary reference	Gantenerumab: a novel human anti-Abeta antibody demonstrates sustained cerebral amyloid-beta binding and elicits cell-mediated removal of human amyloid-beta., Bohrmann B, Baumann K, Benz J, Gerber F, Huber W, Knoflach F, Messer J, Oroszlan K, Rauchenberger R, Richter WF, Rothe C, Urban M, Bardroff M, Winter M, Nordstedt C, Loetscher H, J Alzheimers Dis. 2012;28(1):49-69. doi: 10.3233/JAD-2011-110977. PMID:21955818

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (5csz.pdb1.gz) 76 Kb Biological Unit Coordinates (5csz.pdb2.gz) 75 Kb LPC: Ligand-Protein Contacts for 5CSZ CSU: Contacts of Structural Units for 5CSZ Structure Factors (1639 Kb) Retrieve 5CSZ in mmCIF format [Save to disk] Re-refined 5csz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CSZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CSZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5csz_B] [5csz_A] [5csz_L] [5csz_E] [5csz] [5csz_D] [5csz_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CSZ: [IG_like] [IGv ] by SMART

Other resources with information on 5CSZ

Community annotation for 5CSZ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---