5D92 Membrane Protein date Aug 18, 2015
title Structure Of A Phosphatidylinositolphosphate (Pip) Synthase Renibacterium Salmoninarum
authors O.B.Clarke, D.T.Tomasek, C.D.Jorge, M.Belcher Dufrisne, M.Kim, S. K.R.Rajashankar, W.A.Hendrickson, H.Santos, F.Mancia
compound source
Molecule: Af2299 Protein,Phosphatidylinositol Synthase
Chain: D, A, B, C
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus, Renibacterium Salmoninarum;
Organism_taxid: 224325, 288705
Strain: Atcc 49558 Vc-16 Dsm 4304 Jcm 9628 Nbrc 100 33209 Dsm 20767 Jcm 11484 Nbrc 15589 Ncimb 2235;
Gene: Af_2299, Rsal33209_2010
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.280 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.002 62.489 169.759 90.00 99.77 90.00
method X-Ray Diffractionresolution 3.62 Å
ligand 58A, 8K6, MG enzyme
Gene RSAL33209
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (5d92.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (5d92.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 5D92
  • CSU: Contacts of Structural Units for 5D92
  • Structure Factors (1158 Kb)
  • Retrieve 5D92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D92 from S2C, [Save to disk]
  • Re-refined 5d92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5D92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d92] [5d92_C] [5d92_A] [5d92_D] [5d92_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5D92
  • Community annotation for 5D92 at PDBWiki (http://pdbwiki.org)

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