5DA0 Transport Protein date Aug 19, 2015
title Structure Of The The Slc26 Transporter Slc26dg In Complex Wi Nanobody
authors R.Dutzler, E.R.Geertsma, Y.Chang, F.R.Shaik
compound source
Molecule: Sulphate Transporter
Chain: A
Engineered: Yes
 Organism_scientific: Deinococcus Geothermalis (Strain Dsm 1
Organism_taxid: 319795
Gene: Dgeo_2773
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nanobody
Chain: B
Engineered: Yes
Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.258 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.650 117.280 84.360 90.00 100.09 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand DMU enzyme
Gene DGEO
Gene
Ontology
ChainFunctionProcessComponent
A
  • sulfate transmembrane transp...


    • Primary referenceStructure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family., Geertsma ER, Chang YN, Shaik FR, Neldner Y, Pardon E, Steyaert J, Dutzler R, Nat Struct Mol Biol. 2015 Sep 14. doi: 10.1038/nsmb.3091. PMID:26367249
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (5da0.pdb1.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 5DA0
  • CSU: Contacts of Structural Units for 5DA0
  • Structure Factors (146 Kb)
  • Retrieve 5DA0 in mmCIF format [Save to disk]
  • Re-refined 5da0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DA0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5da0_B] [5da0_A] [5da0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DA0: [IGv ] by SMART
    • Other resources with information on 5DA0
  • Community annotation for 5DA0 at PDBWiki (http://pdbwiki.org)

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