5DFC	Transcription	date	Aug 26, 2015
title	Crystal Structure Of Brd2(Bd2) W370f Mutant With Ligand I-Be Bound
authors	C.Tallant, M.Baud, E.Lin-Shiao, D.Y.Chirgadze, A.Ciulli
compound		source
Molecule: Bromodomain-Containing Protein 2 Chain: A Fragment: Residues 344-455 Synonym: O27.1.1,Really Interesting New Gene 3 Protein Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Brd2, Kiaa9001, Ring3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 2 21 21	R_factor 0.157 R_Free 0.171
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.029 52.677 71.031 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	2PE, EAM, GOL, NI	enzyme
Primary reference	New Synthetic Routes to Triazolo-benzodiazepine Analogues: Expanding the Scope of the Bump-and-Hole Approach for Selective Bromo and Extra-Terminal (BET) Bromodomain Inhibition., Baud MG, Lin-Shiao E, Zengerle M, Tallant C, Ciulli A, J Med Chem. 2016 Feb 25;59(4):1492-500. doi: 10.1021/acs.jmedchem.5b01135. Epub, 2015 Oct 1. PMID:26367539

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (5dfc.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 5DFC CSU: Contacts of Structural Units for 5DFC Structure Factors (342 Kb) Retrieve 5DFC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DFC from S2C, [Save to disk] Re-refined 5dfc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DFC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DFC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dfc] [5dfc_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DFC: [BROMO ] by SMART

Other resources with information on 5DFC

Community annotation for 5DFC at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---