5DGT Lyase date Aug 28, 2015
title Benzoylformate Decarboxylase H70a Mutant At Ph 8.5 From Pseu Putida
authors A.K.Bera, M.S.Hasson
compound source
Molecule: Benzoylformate Decarboxylase
Chain: A
Synonym: Bfdc
Ec: 4.1.1.7
Engineered: Yes
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Gene: Mdlc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Prep7
symmetry Space Group: I 2 2 2
R_factor 0.143 R_Free 0.150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.341 94.802 137.342 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.08 Å
ligand CA, MG, TZD enzyme Lyase E.C.4.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (5dgt.pdb1.gz) 1024 Kb
  • LPC: Ligand-Protein Contacts for 5DGT
  • CSU: Contacts of Structural Units for 5DGT
  • Structure Factors (3910 Kb)
  • Retrieve 5DGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DGT from S2C, [Save to disk]
  • Re-refined 5dgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DGT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dgt_A] [5dgt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DGT
  • Community annotation for 5DGT at PDBWiki (http://pdbwiki.org)

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