5DSE Protein Binding date Sep 17, 2015
title Crystal Structure Of The Ttc7bhyccin Complex
authors X.Wu, J.M.Baskin, K.M.Reinisch, P.De Camilli
compound source
Molecule: Tetratricopeptide Repeat Protein 7b
Chain: A, C
Synonym: Tpr Repeat Protein 7b,Tetratricopeptide Repeat Pro Like-1,Tpr Repeat Protein 7-Like-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttc7b, Ttc7l1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pcoladuet-1

Molecule: Hyccin
Chain: B, D
Synonym: Down-Regulated By Ctnnb1 Protein A,Protein Fam126a
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fam126a, Drctnnb1a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.779 168.068 239.671 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceThe leukodystrophy protein FAM126A (hyccin) regulates PtdIns(4)P synthesis at the plasma membrane., Baskin JM, Wu X, Christiano R, Oh MS, Schauder CM, Gazzerro E, Messa M, Baldassari S, Assereto S, Biancheri R, Zara F, Minetti C, Raimondi A, Simons M, Walther TC, Reinisch KM, De Camilli P, Nat Cell Biol. 2015 Nov 16. doi: 10.1038/ncb3271. PMID:26571211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]
  • Biological Unit Coordinates (5dse.pdb1.gz) 260 Kb
  • Biological Unit Coordinates (5dse.pdb2.gz) 326 Kb
  • CSU: Contacts of Structural Units for 5DSE
  • Structure Factors (487 Kb)
  • Retrieve 5DSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DSE from S2C, [Save to disk]
  • Re-refined 5dse structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DSE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dse_C] [5dse_D] [5dse_B] [5dse_A] [5dse]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DSE: [TPR ] by SMART
  • Other resources with information on 5DSE
  • Community annotation for 5DSE at PDBWiki (http://pdbwiki.org)

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