5DSU Signaling Protein date Sep 17, 2015
title Crystal Structure Of Double Mutant Of N-Domain Of Human Calm
authors A.Ababou, M.Zaleska
compound source
Molecule: Calmodulin
Chain: A
Fragment: Unp Residues 3-78
Synonym: Cam
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 32 2 1
R_factor 0.229 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.400 38.400 81.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.93 Å
ligand CA, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOn the Ca2+ binding and conformational change in EF-hand domains: Experimental evidence of Ca2+-saturated intermediates of N-domain of calmodulin., Ababou A, Zaleska M, Pfuhl M, Biochim Biophys Acta. 2017 Mar 10;1865(6):640-651. doi:, 10.1016/j.bbapap.2017.03.003. PMID:28288938
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (5dsu.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 5DSU
  • CSU: Contacts of Structural Units for 5DSU
  • Structure Factors (97 Kb)
  • Retrieve 5DSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DSU from S2C, [Save to disk]
  • Re-refined 5dsu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DSU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dsu_A] [5dsu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DSU
  • Community annotation for 5DSU at PDBWiki (http://pdbwiki.org)

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