5DT4 Transferase date Sep 17, 2015
title Aurora A Kinase In Complex With Aa35 And Atp In Space Group
authors M.Janecek, M.Rossmann, P.Sharma, A.Emery, G.J.Mckenzie, D.J.Huggi S.Stockwell, J.A.Stokes, E.G.Almeida, B.Hardwick, A.J.Narvaez, M D.R.Spring, A.R.Venkitaraman
compound source
Molecule: Aurora Kinase A
Chain: A
Fragment: Unp Residues 126-390
Synonym: Aurora 2,Auroraipl1-Related Kinase 1,Hark1,Breast Amplified Kinase,Serinethreonine-Protein Kinase 15,Serine Protein Kinase 6,Serinethreonine-Protein Kinase Aurora-A;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aurka, Aik, Airk1, Ark1, Aura, Ayk1, Btak, Iak1, Stk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Pubs520
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbat4
symmetry Space Group: P 61 2 2
R_factor 0.190 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.500 82.500 170.020 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.86 Å
ligand 5DN, ATP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAllosteric modulation of AURKA kinase activity by a small-molecule inhibitor of its protein-protein interaction with TPX2., Janecek M, Rossmann M, Sharma P, Emery A, Huggins DJ, Stockwell SR, Stokes JE, Tan YS, Almeida EG, Hardwick B, Narvaez AJ, Hyvonen M, Spring DR, McKenzie GJ, Venkitaraman AR, Sci Rep. 2016 Jun 24;6:28528. doi: 10.1038/srep28528. PMID:27339427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5dt4.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5DT4
  • CSU: Contacts of Structural Units for 5DT4
  • Structure Factors (208 Kb)
  • Retrieve 5DT4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DT4 from S2C, [Save to disk]
  • Re-refined 5dt4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DT4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DT4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dt4] [5dt4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DT4: [S_TKc ] by SMART
  • Other resources with information on 5DT4
  • Community annotation for 5DT4 at PDBWiki (http://pdbwiki.org)

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