5E0V Dna Binding Protein date Sep 29, 2015
title Human Pcna Variant (S228i) Complexed With Fen1 At 2.1 Angstr
authors C.M.Duffy, B.J.Hilbert, B.A.Kelch
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, B
Synonym: Pcna,Cyclin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr(De3)
Expression_system_plasmid: Pet3c

Molecule: Flap Endonuclease 1
Chain: C, D
Fragment: Unp Residues 299-314
Synonym: Fen-1,Flap Structure-Specific Endonuclease 1
Ec: 3.1.-.-
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 3
R_factor 0.202 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.721 80.721 66.556 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Disease-Causing Variant in PCNA Disrupts a Promiscuous Protein Binding Site., Duffy CM, Hilbert BJ, Kelch BA, J Mol Biol. 2016 Mar 27;428(6):1023-40. doi: 10.1016/j.jmb.2015.11.029. Epub 2015, Dec 11. PMID:26688547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5e0v.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (5e0v.pdb2.gz) 79 Kb
  • CSU: Contacts of Structural Units for 5E0V
  • Structure Factors (283 Kb)
  • Retrieve 5E0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E0V from S2C, [Save to disk]
  • Re-refined 5e0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e0v_B] [5e0v_D] [5e0v_C] [5e0v] [5e0v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5E0V
  • Community annotation for 5E0V at PDBWiki (http://pdbwiki.org)

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