5E5E Hydrolase date Oct 08, 2015
title X-Ray Structure Of The Adduct Formed In The Reaction Between And A Neutral Organometallic Derivative [Pt(Pbi)(Me)(Dmso)] (2'-Pyridil)Benzimidazole (Compound 3)
authors A.Merlino
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B
Synonym: Rnase 1,Rnase A
Ec: 3.1.27.5
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.398 32.768 72.540 90.00 89.82 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand DMS, PT enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


    • Primary referenceCytotoxic properties of a new organometallic platinum(ii) complex and its gold(i) heterobimetallic derivatives., Serratrice M, Maiore L, Zucca A, Stoccoro S, Landini I, Mini E, Massai L, Ferraro G, Merlino A, Messori L, Cinellu MA, Dalton Trans. 2015 Nov 26. PMID:26609781
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5e5e.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (5e5e.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 5E5E
  • CSU: Contacts of Structural Units for 5E5E
  • Structure Factors (485 Kb)
  • Retrieve 5E5E in mmCIF format [Save to disk]
  • Re-refined 5e5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E5E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e5e_B] [5e5e] [5e5e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5E5E: [RNAse_Pc ] by SMART
    • Other resources with information on 5E5E
  • Community annotation for 5E5E at PDBWiki (http://pdbwiki.org)

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