5E7X Lipid Binding Protein date Oct 13, 2015
title Ligand Binding Domain 1 Of Penicillium Marneffei Mp1 Protein Complex With Palmitic Acid
authors W.H.Lam, H.Zhang, Q.Hao
compound source
Molecule: Cell Wall Antigen
Chain: A
Fragment: Unp Residues 27-181
Engineered: Yes
 Organism_scientific: Talaromyces Marneffei Pm1
Organism_taxid: 1077442
Gene: Gq26_0022220
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: His-Sumo
symmetry Space Group: P 43
R_factor 0.179 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.580 52.580 57.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, GOL, PLM enzyme
Primary referenceTalaromyces marneffei Mp1 protein, a novel virulence factor, carries two arachidonic acid-binding domains to suppress inflammatory responses in hosts., Lam WH, Sze KH, Ke Y, Tse MK, Zhang H, Woo PCY, Lau SKP, Lau CCY, Xu S, Lai PM, Zhou T, Antonyuk SV, Kao RYT, Yuen KY, Hao Q, Infect Immun. 2019 Jan 22. pii: IAI.00679-18. doi: 10.1128/IAI.00679-18. PMID:30670555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (5e7x.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5E7X
  • CSU: Contacts of Structural Units for 5E7X
  • Structure Factors (315 Kb)
  • Retrieve 5E7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E7X from S2C, [Save to disk]
  • Re-refined 5e7x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E7X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e7x_A] [5e7x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E7X
  • Community annotation for 5E7X at PDBWiki (http://pdbwiki.org)

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